私はこのような構造のリストを持っていますmy.list[[file.id]][value.id]]<-a value(1 or 0)
。同じvalue.idが異なるfile.idに存在する可能性があります。R:リストをマトリックスに再編成
すべてのvalue.idsとしてrownamesを持つ行列が必要です。colnamesはfile.idsであり、各セルはmy.list[[file.id]][[value.id]]
です。
クレイジーのように反復せずにすばやく行う方法はありますか?
サンプルデータ:
リスト:
$`Zhou_et_al_2004`
CDC42:P60953 CDK2D:NONAME MAPK12:P53778 E2F3:NONAME GRB2:P62424 GRB2:P62993 RFA:NONAME
"up" "up" "down" "down" "down" "down" "down"
CDK9:P50750 JUP/DP3:NONAME MEK1:NONAME RFC38:NONAME DP2:NONAME RFC37:NONAME GADD45:NONAME
"down" "down" "down" "down" "down" "down" "down"
$`Zhou_et_al_2006`
CTTN:Q14247 GTSE1:Q9NYZ3 CHST11:Q9N CHST11:PF2 TNRC6A:Q8NDV7 MMP9:P14780 NRIP3:Q9N
"up" "up" "up" "up" "up" "up" "up"
NRIP3:Q35 EGFR:P00533 GFPT2:NONAME TPCN2:Q8NHX9 BBP:NONAME SQLE:Q14534 DISP2:NONAME
"up" "up" "up" "up" "up" "up" "up"
PAPPA:Q13219 BMP2:P12643 PCM1:Q15154 SUCLG2:Q96I99 ASAH1:Q13510 UQCRC2:P22695 MTUS1:NONAME
"up" "up" "down" "down" "down" "down" "down"
MUC20:NONAME FRAT2:NONAME PLA2G4A:P47712
"down" "down" "down"
$`Zhou_et_al_2007`
CTTN:Q14247 GTSE1:Q9NYZ3 CHST11:Q9N CHST11:PF2 TNRC6A:Q8NDV7 NRIP3:Q9N
"up" "up" "up" "up" "up" "up"
NRIP3:Q35 USP32:Q8NFA0 PPFIBP1:Q86W92 MALAT1:NONAME TRA2A:NONAME MGC17624:NONAME
"up" "up" "up" "up" "up" "up"
SLC6A2:P23975 USP42:Q9H9J4 RASEF:NONAME SEMA3C:Q99985 NDE1:Q9NXR1 TRA1:NONAME
"up" "up" "up" "up" "up" "up"
PPFIA1:Q13136 PPFIA1:Q16787 ITGA9:Q13797 ITGA9:Q14469 LMO2:P25791 NR2F2:P24468
"up" "up" "down" "down" "down" "down"
KIAA0882:NONAME PCM1:Q15154 CYB5:NONAME IDH1:NONAME MYLIP:Q8WY64 ASAH1:Q13510
"down" "down" "down" "down" "down" "down"
HADHSC:NONAME FAM84B:Q96KN1 ADH5:P11766 NTN4:Q9HB63 AK3:Q9UIJ7 MTUS1:NONAME
"down" "down" "down" "down" "down" "down"
KIAA1815:NONAME
"down"
MATRIX:
Zhou2004 Zhou2006 Zhou2007
CDC42:P60953 "up" NA NA
CDK2D:NONAME "up" NA NA
MAPK12:P53778 "down" NA NA
E2F3:NONAME "down" NA NA
GRB2:P62424 "down" NA NA
GRB2:P62993 "down" NA NA
RFA:NONAME "down" NA NA
CDK9:P50750 "down" NA NA
JUP/DP3:NONAME "down" NA NA
MEK1:NONAME "down" NA NA
RFC38:NONAME "down" NA NA
DP2:NONAME "down" NA NA
RFC37:NONAME "down" NA NA
GADD45:NONAME "down" NA NA
CTTN:Q14247 NA "up" "up"
GTSE1:Q9NYZ3 NA "up" "up"
CHST11:Q9N NA "up" "up"
CHST11:PF2 NA "up" "up"
等plyr
パッケージから
入力と予想出力としてサンプルデータを追加してください。 – Chase
貼り付けが簡単になるようにサンプルデータを 'dput 'できますか? – James