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OpenSuse 42.1のMATLAB 2017a環境で、GMT（Generic Map Tools）バージョン5.2.1を使用しようとしています。libgdal.so.20：未定義シンボル：_ZN11xercesc_3_111InputSource11setEncodingEPKt
[email protected]:~> which gmt
/usr/bin/gmt
[email protected]:~> gmt
GMT - The Generic Mapping Tools, Version 5.2.1 (r15220) [64-bit] [MP] [8 cores] (c) 1991-2015 Paul Wessel, Walter H. F. Smith, R. Scharroo, J. Luis, and F. Wobbe
Supported in part by the US National Science Foundation (http://www.nsf.gov/)
and volunteers from around the world (see http://gmt.soest.hawaii.edu/).
This program comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of this program under the terms of the
GNU Lesser General Public License
(http://www.gnu.org/licenses/lgpl.html).
For more information about legal matters, see the file named LICENSE.TXT.
usage: gmt [options]
gmt <module name> [<module-options>]
options:
--help List a description of available GMT modules.
--show-bindir Show directory with GMT executables.
--show-cores Show number of available cores.
--show-datadir Show directory/ies with user data.
--show-modules Single list of all module names.
--show-plugindir Show directory for plug-ins.
--show-sharedir Show directory for shared GMT resources.
--version Print GMT version number.
if <module-options> is '=' we call exit (0) if module exist and non-zero
otherwise.
ご覧のとおり、gmt（コマンド）は端末で実行されています。 matlab環境では、私はgdalライブラリに次の問題があります。任意の提案どのようにこれを解決するには？
>> !ls %command ls working fine
esa_snap_installers giant pyaps TRAIN_3.beta_20171112 wraptext.m
>> !gmt
gmt: symbol lookup error: /usr/lib64/libgdal.so.20: undefined symbol:_ZN11xercesc_3_111InputSource11setEncodingEPKt
PATHの値がterminalとmatlabから同じで、同じ結果が得られたかどうかを確認しました。
[email protected]:~> echo $PATH
/usr/lib64:/usr/local/StaMPS_v3.3b1/bin:/usr/local/GMT5SAR//bin:
/usr/lib64:/usr/local/StaMPS_v3.3b1/bin:/usr/local/GMT5SAR//bin:
/usr/lib64/mpi/gcc/openmpi/bin:/home/kleanthis/bin:/usr/local/bin:
/usr/bin:/bin:/usr/bin/X11:/usr/games:
/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin
>> system('echo $PATH')
/usr/lib64:/usr/local/StaMPS_v3.3b1/bin:/usr/local/GMT5SAR//bin
:/usr/lib64:/usr/local/StaMPS_v3.3b1/bin:/usr/local/GMT5SAR//bin:
/usr/lib64/mpi/gcc/openmp/bin:/home/kleanthis/bin:/usr/local/bin
:/usr/bin:/bin :/usr/bin/X11:/usr/games
:/opt/bin:/usr/lib/mit/bin:/usr/lib/mit/sbin
matlabのLD_LIBRARY_PATH変数にはいくつかの追加のディレクトリがありますが、これらのディレクトリにはgdalのライブラリはありません。
[email protected]:~> echo $LD_LIBRARY_PATH
/usr/lib64/:/usr/lib64/:/usr/lib64/mpi/gcc/openmpi/lib64
>> system('echo $LD_LIBRARY_PATH')
/usr/local/MATLAB/R2017a/sys/opengl/lib/glnxa64:/usr/local/MATLAB/R2017a/sys/os/glnxa64:/usr/local/MATLAB/R2017a/bin/glnxa64:/usr/local/MATLAB/R2017a/extern/lib/glnxa64:/usr/local/MATLAB/R2017a/runtime/glnxa64:/usr/local/MATLAB/R2017a/sys/java/jre/glnxa64/jre/lib/amd64/native_threads:/usr/local/MATLAB/R2017a/sys/java/jre/glnxa64/jre/lib/amd64/server
:/usr/lib64
ERRORメッセージがある：ERROR約
gmt: symbol lookup error: /usr/lib64/libgdal.so.20: undefined
symbol:_ZN11xercesc_3_111InputSource11setEncodingEPKt
詳細情報：
[email protected]:~> cd /usr/lib64
[email protected]:/usr/lib64> ls libgdal*
libgdal.so libgdal.so.1 libgdal.so.1.18.3 libgdal.so.20
libgdal.so.20.3.2
[email protected]:/usr/lib64> stat libgdal.so.20
File: ‘libgdal.so.20’ -> ‘libgdal.so.20.3.2’
Size: 17 Blocks: 0 IO Block: 4096 symbolic link
Device: 806h/2054d Inode: 45503108 Links: 1
Access: (0777/lrwxrwxrwx) Uid: ( 0/ root) Gid: ( 0/ root)
Access: 2017-12-10 14:43:35.055459036 +0200
Modify: 2017-12-10 14:43:31.251459025 +0200
Change: 2017-12-10 14:43:31.367459026 +0200
Birth: -
[email protected]:/usr/lib64> stat libgdal.so.20.3.2
File: ‘libgdal.so.20.3.2’
Size: 19804496 Blocks: 38688 IO Block: 4096 regular file
Device: 806h/2054d Inode: 45500543 Links: 1
Access: (0644/-rw-r--r--) Uid: ( 0/ root) Gid: ( 0/ root)
Access: 2017-12-10 14:43:35.055459036 +0200
Modify: 2017-12-05 01:32:17.000000000 +0200
Change: 2017-12-10 14:43:31.751459027 +0200
Birth: -
libgdal.so.3.2
の依存関係をリストするために[email protected]:/usr/lib64> ldd libgdal.so.20.3.2
ldd: warning: you do not have execution permission for `./libgdal.so.20.3.2'
linux-vdso.so.1 (0x00007ffc0358f000)
libpoppler.so.44 => /usr/lib64/libpoppler.so.44 (0x00007ff6df5c5000)
libfreexl.so.1 => /usr/lib64/libfreexl.so.1 (0x00007ff6df3b5000)
libgeos_c.so.1 => /usr/lib64/libgeos_c.so.1 (0x00007ff6df18d000)
libwebp.so.5 => /usr/lib64/libwebp.so.5 (0x00007ff6def2d000)
libodbc.so.2 => /usr/lib64/libodbc.so.2 (0x00007ff6decc5000)
libodbcinst.so.2 => /usr/lib64/libodbcinst.so.2 (0x00007ff6deaad000)
libexpat.so.1 => /usr/lib64/libexpat.so.1 (0x00007ff6de87d000)
libxerces-c-3.1.so => /usr/lib64/libxerces-c-3.1.so (0x00007ff6de2bd000)
libopenjp2.so.7 => /usr/lib64/libopenjp2.so.7 (0x00007ff6de065000)
libnetcdf.so.11 => /usr/lib64/libnetcdf.so.11 (0x00007ff6dacc5000)
libhdf5.so.10 => /usr/lib64/libhdf5.so.10 (0x00007ff6da6e5000)
libgif.so.6 => /usr/lib64/libgif.so.6 (0x00007ff6da4d5000)
libjpeg.so.8 => /usr/lib64/libjpeg.so.8 (0x00007ff6da27d000)
libgeotiff.so.2 => /usr/lib64/libgeotiff.so.2 (0x00007ff6da045000)
libtiff.so.5 => /usr/lib64/libtiff.so.5 (0x00007ff6d9dcd000)
libpng16.so.16 => /usr/lib64/libpng16.so.16 (0x00007ff6d9b8d000)
libpq.so.5 => /usr/lib64/libpq.so.5 (0x00007ff6d995d000)
libspatialite.so.7 => /usr/lib64/libspatialite.so.7 (0x00007ff6d91e5000)
libsqlite3.so.0 => /usr/lib64/libsqlite3.so.0 (0x00007ff6d8f1d000)
libpcre.so.1 => /usr/lib64/libpcre.so.1 (0x00007ff6d8cad000)
libcurl.so.4 => /usr/lib64/libcurl.so.4 (0x00007ff6d8a35000)
libxml2.so.2 => /usr/lib64/libxml2.so.2 (0x00007ff6d86c5000)
libmysqlclient.so.18 => /usr/lib64/libmysqlclient.so.18 (0x00007ff6d8165000)
libpthread.so.0 => /lib64/libpthread.so.0 (0x00007ff6d7ee5000)
libz.so.1 => /lib64/libz.so.1 (0x00007ff6d7ccd000)
libdl.so.2 => /lib64/libdl.so.2 (0x00007ff6d7ac5000)
libstdc++.so.6 => /usr/lib64/libstdc++.so.6 (0x00007ff6d773d000)
libm.so.6 => /lib64/libm.so.6 (0x00007ff6d7435000)
libc.so.6 => /lib64/libc.so.6 (0x00007ff6d708d000)
libgcc_s.so.1 => /lib64/libgcc_s.so.1 (0x00007ff6d6e75000)
liblcms2.so.2 => /usr/lib64/liblcms2.so.2 (0x00007ff6d6c15000)
libfontconfig.so.1 => /usr/lib64/libfontconfig.so.1 (0x00007ff6d69d5000)
libfreetype.so.6 => /usr/lib64/libfreetype.so.6 (0x00007ff6d673d000)
libgeos-3.4.2.so => /usr/lib64/libgeos-3.4.2.so (0x00007ff6d6395000)
libltdl.so.7 => /usr/lib64/libltdl.so.7 (0x00007ff6d6185000)
libmfhdf.so.4.2.11 => /usr/lib64/libmfhdf.so.4.2.11 (0x00007ff6d5f55000)
libhdf5_hl.so.10 => /usr/lib64/libhdf5_hl.so.10 (0x00007ff6d5d2d000)
libproj.so.12 => /usr/lib64/libproj.so.12 (0x00007ff6d5abd000)
liblzma.so.5 => /usr/lib64/liblzma.so.5 (0x00007ff6d5895000)
libjbig.so.2 => /usr/lib64/libjbig.so.2 (0x00007ff6d5685000)
libssl.so.1.0.0 => /lib64/libssl.so.1.0.0 (0x00007ff6d541d000)
libcrypto.so.1.0.0 => /lib64/libcrypto.so.1.0.0 (0x00007ff6d5025000)
libgssapi_krb5.so.2 => /usr/lib64/libgssapi_krb5.so.2 (0x00007ff6d4ddd000)
libldap_r-2.4.so.2 => /usr/lib64/libldap_r-2.4.so.2 (0x00007ff6d4b85000)
libidn.so.11 => /usr/lib64/libidn.so.11 (0x00007ff6d494d000)
libssh2.so.1 => /usr/lib64/libssh2.so.1 (0x00007ff6d471d000)
liblber-2.4.so.2 => /usr/lib64/liblber-2.4.so.2 (0x00007ff6d450d000)
libldap-2.4.so.2 => /usr/lib64/libldap-2.4.so.2 (0x00007ff6d42bd000)
/lib64/ld-linux-x86-64.so.2 (0x0000559694a06000)
libbz2.so.1 => /usr/lib64/libbz2.so.1 (0x00007ff6d40ad000)
libhdf.so.4.2.11 => /usr/lib64/libhdf.so.4.2.11 (0x00007ff6d3df5000)
libkrb5.so.3 => /usr/lib64/libkrb5.so.3 (0x00007ff6d3b1d000)
libk5crypto.so.3 => /usr/lib64/libk5crypto.so.3 (0x00007ff6d38ed000)
libcom_err.so.2 => /usr/lib64/libcom_err.so.2 (0x00007ff6d36e5000)
libkrb5support.so.0 => /usr/lib64/libkrb5support.so.0 (0x00007ff6d34d5000)
libresolv.so.2 => /lib64/libresolv.so.2 (0x00007ff6d32bd000)
libsasl2.so.3 => /usr/lib64/libsasl2.so.3 (0x00007ff6d309d000)
libkeyutils.so.1 => /lib64/libkeyutils.so.1 (0x00007ff6d2e95000)
libselinux.so.1 => /lib64/libselinux.so.1 (0x00007ff6d2c6d000)
上記のエラー -
libxercesはGMTとMatlabのはこれが役立つかもしれない彼らの共有ライブラリ に問題が発生したいかなる助言のための
[email protected]:/usr/lib64> stat libxerces-c-3.1.so
File: ‘libxerces-c-3.1.so’
Size: 3908336 Blocks: 7640 IO Block: 4096 regular file
Device: 806h/2054d Inode: 45494387 Links: 1
Access: (0755/-rwxr-xr-x) Uid: ( 0/ root) Gid: ( 0/ root)
Access: 2017-12-12 22:12:18.144185210 +0200
Modify: 2016-08-25 15:17:03.000000000 +0300
Change: 2016-09-06 16:36:03.857567744 +0300
Birth: -
どうもありがとう、 Kleanthis