エラーLinuxシステムにR-3.3.1をインストールすると「Cコンパイラが実行ファイルを作成できません」

Question

LinuxシステムにR-3.3.1をインストールします。

./configure --prefix=/home/yccai/Programs/R 
--enable-R-shlib LDFLAGS="-L/home/yccai/Programs/Libs/zlib/lib -L/home/yccai/Programs/Libs/bzip2/lib -L/home/yccai/Programs/Libs/xz-5.2.2/lib -L/home/yccai/Programs/Libs/pcre-8.39/lib -L/home/yccai/Programs/Libs/curl-7.50.3/lib" CPPFLAGS="-l/home/yccai/Programs/Libs/zlib/include -l/home/yccai/Programs/Libs/bzip2/include -l/home/yccai/Programs/Libs/xz-5.2.2/include -l/home/yccai/Programs/Libs/pcre-8.39/include -l/home/yccai/Programs/Libs/curl-7.50.3/include 

"C compiler cannot create executables"が発生したエラー：私は手順を実行するとき、私はR.をインストールする前に、私はすべての必要な依存関係のライブラリがインストールされています。

私はインターネット上でのソリューションを見上げています。しかし、それは動作しません。

This file contains any messages produced by compilers while 
running configure, to aid debugging if configure makes a mistake. 

It was created by R configure 3.3.1, which was 
generated by GNU Autoconf 2.69. Invocation command line was 

    $ ./configure --prefix=/home/yccai/Programs/R --enable-R-shlib LDFLAGS=-L/home/yccai/Programs/Libs/zlib/lib -L/home/yccai/Programs/Libs/bzip2/lib -L/home/yccai/Programs/Libs/xz-5.2.2/lib -L/home/yccai/Programs/Libs/pcre-8.39/lib -L/home/yccai/Programs/Libs/curl-7.50.3/lib CPPFLAGS=-l/home/yccai/Programs/Libs/zlib/include -l/home/yccai/Programs/Libs/bzip2/include -l/home/yccai/Programs/Libs/xz-5.2.2/include -l/home/yccai/Programs/Libs/pcre-8.39/include -l/home/yccai/Programs/Libs/curl-7.50.3/include 

## --------- ## 
## Platform. ## 
## --------- ## 

hostname = console 
uname -m = x86_64 
uname -r = 2.6.18-308.el5 
uname -s = Linux 
uname -v = #1 SMP Tue Feb 21 20:06:06 EST 2012 

/usr/bin/uname -p = unknown 
/bin/uname -X  = unknown 

/bin/arch    = x86_64 
/usr/bin/arch -k  = unknown 
/usr/convex/getsysinfo = unknown 
/usr/bin/hostinfo  = unknown 
/bin/machine   = unknown 
/usr/bin/oslevel  = unknown 
/bin/universe   = unknown 

PATH: /home/yccai/Programs/Java/jre1.8.0_101/bin 
PATH: /home/yccai/Programs/Anaconda2/bin 
PATH: /usr/lib64/qt-3.3/bin 
PATH: /usr/kerberos/bin 
PATH: /usr/local/bin 
PATH: /bin 
PATH: /usr/bin 
PATH: /home/yccai/netinfer 
PATH: /home/applic/schrodinger2016 
PATH: /home/applic/schrodinger2016/utilities 
PATH: /home/applic/goldsuite-5.2/bin 
PATH: /home/applic/goldsuite-5.2/GOLD/utilities 
PATH: /home/applic/autodock4 
PATH: /home/applic/autodock4/bin 
PATH: /home/yccai/Programs/Bioclipse.2.6-final 
PATH: /home/applic/dock6/bin 
PATH: /home/applic/chimera/bin 
PATH: /home/applic/dms 
PATH: /gdata/lun1/software/g03/bsd 
PATH: /gdata/lun1/software/g03/private 
PATH: /gdata/lun1/software/g03 
PATH: /home/rwshi/soft/g03 
PATH: /home/yccai/Programs/moe/bin 
PATH: /home/yccai/Programs/vmd-1.9.2/bin 
PATH: /home/rwshi/soft/openmpi/bin 
PATH: /home/rwshi/soft/auto/autoconf/bin 
PATH: /home/rwshi/soft/openmpi/include 
PATH: /home/yccai/Programs/Libs/bzip2/bin 
PATH: /home/yccai/Programs/Libs/bzip2/lib 
PATH: /home/yccai/Programs/Libs/bzip2/include 
PATH: /home/yccai/Programs/Libs/curl-7.50.3/bin 
PATH: /home/yccai/Programs/simul/g_mmpbsa/bin 
PATH: /home/yccai/Programs/simul/apbs/bin 
PATH: /home/rwshi/soft/test/plumed/bin 
PATH: /home/rwshi/soft/gmx465-1/bin 
PATH: /home/applic/grace/bin 
PATH: /home/lsun/Program/GASTON/gaston-1.1 
PATH: /home/yccai/Programs/simul/Brimm/bin 
PATH: /home/applic/libsvm-3.20 
PATH: /home/applic/libsvm-3.20/tools 
PATH: /home/applic/MATLAB/R2012b/bin 
PATH: /home/yccai/Programs/propka-3.1 
PATH: /home/yccai/Programs/SmallApplic/IsoMIF 
PATH: /home/yccai/Programs/SmallApplic/catdcd4.0 
PATH: /home/yccai/Programs/SmallApplic 
PATH: /home/yccai/bin 


## ----------- ## 
## Core tests. ## 
## ----------- ## 

configure:3562: checking build system type 
configure:3576: result: x86_64-pc-linux-gnu 
configure:3596: checking host system type 
configure:3609: result: x86_64-pc-linux-gnu 
configure:4307: checking for pwd 
configure:4325: found /bin/pwd 
configure:4338: result: /bin/pwd 
configure:4346: checking whether builddir is srcdir 
configure:4354: result: yes 
configure:4359: checking for working aclocal 
configure:4363: result: found 
configure:4372: checking for working autoconf 
configure:4376: result: found 
configure:4385: checking for working automake 
configure:4389: result: found 
configure:4398: checking for working autoheader 
configure:4402: result: found 
configure:4411: checking whether ln -s works 
configure:4415: result: yes 
configure:4426: checking for bison 
configure:4442: found /usr/bin/bison 
configure:4453: result: bison -y 
configure:4469: checking for ar 
configure:4485: found /usr/bin/ar 
configure:4496: result: ar 
configure:4524: checking for a BSD-compatible install 
configure:4592: result: /usr/bin/install -c 
configure:4627: checking for sed 
configure:4646: found /bin/sed 
configure:4658: result: /bin/sed 
configure:4676: checking for which 
configure:4694: found /usr/bin/which 
configure:4706: result: /usr/bin/which 
configure:4726: checking for less 
configure:4744: found /usr/bin/less 
configure:4756: result: /usr/bin/less 
configure:4779: checking for gtar 
configure:4797: found /bin/gtar 
configure:4809: result: /bin/gtar 
configure:4831: checking for tex 
configure:4849: found /usr/bin/tex 
configure:4861: result: /usr/bin/tex 
configure:4876: checking for pdftex 
configure:4894: found /usr/bin/pdftex 
configure:4906: result: /usr/bin/pdftex 
configure:4926: checking for pdflatex 
configure:4944: found /usr/bin/pdflatex 
configure:4956: result: /usr/bin/pdflatex 
configure:4976: checking for makeindex 
configure:4994: found /usr/bin/makeindex 
configure:5006: result: /usr/bin/makeindex 
configure:5021: checking for texi2any 
configure:5054: result: no 
configure:5143: WARNING: you cannot build info or HTML versions of the R manuals 
configure:5154: checking for texi2dvi 
configure:5187: result: no 
configure:5204: checking for kpsewhich 
configure:5222: found /usr/bin/kpsewhich 
configure:5234: result: /usr/bin/kpsewhich 
configure:5246: checking for latex inconsolata package 
configure:5262: result: missing 
configure:5265: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally 
configure:5279: checking for unzip 
configure:5297: found /usr/bin/unzip 
configure:5309: result: /usr/bin/unzip 
configure:5325: checking for zip 
configure:5343: found /usr/bin/zip 
configure:5355: result: /usr/bin/zip 
configure:5371: checking for gzip 
configure:5389: found /bin/gzip 
configure:5401: result: /bin/gzip 
configure:5417: checking for bzip2 
configure:5435: found /usr/bin/bzip2 
configure:5447: result: /usr/bin/bzip2 
configure:5465: checking for firefox 
configure:5483: found /usr/bin/firefox 
configure:5495: result: /usr/bin/firefox 
configure:5512: result: using default browser ... /usr/bin/firefox 
configure:5522: checking for acroread 
configure:5555: result: no 
configure:5522: checking for acroread4 
configure:5555: result: no 
configure:5522: checking for xdg-open 
configure:5555: result: no 
configure:5522: checking for evince 
configure:5540: found /usr/bin/evince 
configure:5552: result: /usr/bin/evince 
configure:5573: checking for notangle 
configure:5604: result: false 
configure:5615: checking for realpath 
configure:5646: result: false 
configure:5659: checking for pkg-config 
configure:5678: found /usr/bin/pkg-config 
configure:5690: result: /usr/bin/pkg-config 
configure:5750: checking for gcc 
configure:5766: found /usr/local/bin/gcc 
configure:5777: result: gcc 
configure:6006: checking for C compiler version 
configure:6015: gcc --version >&5 
gcc (GCC) 4.7.2 
Copyright (C) 2012 Free Software Foundation, Inc. 
This is free software; see the source for copying conditions. There is NO 
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. 

configure:6026: $? = 0 
configure:6015: gcc -v >&5 
Using built-in specs. 
COLLECT_GCC=gcc 
COLLECT_LTO_WRAPPER=/usr/local/libexec/gcc/x86_64-unknown-linux-gnu/4.7.2/lto-wrapper 
Target: x86_64-unknown-linux-gnu 
Configured with: ../gcc-4.7.2/configure --enable-checking=release 
Thread model: posix 
gcc version 4.7.2 (GCC) 
configure:6026: $? = 0 
configure:6015: gcc -V >&5 
gcc: error: unrecognized command line option '-V' 
gcc: fatal error: no input files 
compilation terminated. 
configure:6026: $? = 1 
configure:6015: gcc -qversion >&5 
gcc: error: unrecognized command line option '-qversion' 
gcc: fatal error: no input files 
compilation terminated. 
configure:6026: $? = 1 
configure:6046: checking whether the C compiler works 
configure:6068: gcc -l/home/yccai/Programs/Libs/zlib/include -l/home/yccai/Programs/Libs/bzip2/include -l/home/yccai/Programs/Libs/xz-5.2.2/include -l/home/yccai/Programs/Libs/pcre-8.39/include -l/home/yccai/Programs/Libs/curl-7.50.3/include -L/home/yccai/Programs/Libs/zlib/lib -L/home/yccai/Programs/Libs/bzip2/lib -L/home/yccai/Programs/Libs/xz-5.2.2/lib -L/home/yccai/Programs/Libs/pcre-8.39/lib -L/home/yccai/Programs/Libs/curl-7.50.3/lib conftest.c >&5 
/usr/bin/ld: cannot find -l/home/yccai/Programs/Libs/zlib/include 
collect2: error: ld returned 1 exit status 
configure:6072: $? = 1 
configure:6110: result: no 
configure: failed program was: 
| /* confdefs.h */ 
| #define PACKAGE_NAME "R" 
| #define PACKAGE_TARNAME "R" 
| #define PACKAGE_VERSION "3.3.1" 
| #define PACKAGE_STRING "R 3.3.1" 
| #define PACKAGE_BUGREPORT "https://bugs.r-project.org" 
| #define PACKAGE_URL "https://www.r-project.org" 
| #define PACKAGE "R" 
| #define VERSION "3.3.1" 
| #define R_PLATFORM "x86_64-pc-linux-gnu" 
| #define R_CPU "x86_64" 
| #define R_VENDOR "pc" 
| #define R_OS "linux-gnu" 
| #define Unix 1 
| #define R_ARCH "" 
| /* end confdefs.h. */ 
| 
| int 
| main() 
| { 
| 
| ; 
| return 0; 
| } 
configure:6115: error: in `/home/yccai/SoftPkg/R-3.3.1': 
configure:6117: error: C compiler cannot create executables 
See `config.log' for more details 

## ---------------- ## 
## Cache variables. ## 
## ---------------- ## 

ac_cv_build=x86_64-pc-linux-gnu 
ac_cv_env_BLAS_LIBS_set= 
ac_cv_env_BLAS_LIBS_value= 
ac_cv_env_CCC_set= 
ac_cv_env_CCC_value= 
ac_cv_env_CC_set= 
ac_cv_env_CC_value= 
ac_cv_env_CFLAGS_set=set 
ac_cv_env_CFLAGS_value= 
ac_cv_env_CPICFLAGS_set= 
ac_cv_env_CPICFLAGS_value= 
ac_cv_env_CPPFLAGS_set=set 
ac_cv_env_CPPFLAGS_value='-l/home/yccai/Programs/Libs/zlib/include -l/home/yccai/Programs/Libs/bzip2/include -l/home/yccai/Programs/Libs/xz-5.2.2/include -l/home/yccai/Programs/Libs/pcre-8.39/include -l/home/yccai/Programs/Libs/curl-7.50.3/include' 
ac_cv_env_CPP_set= 
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ac_cv_env_CXX_set= 
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ac_cv_env_DEFS_set= 
ac_cv_env_DEFS_value= 
ac_cv_env_DYLIB_LDFLAGS_set= 
ac_cv_env_DYLIB_LDFLAGS_value= 
ac_cv_env_DYLIB_LD_set= 
ac_cv_env_DYLIB_LD_value= 
ac_cv_env_F77_set= 
ac_cv_env_F77_value= 
ac_cv_env_FCFLAGS_set= 
ac_cv_env_FCFLAGS_value= 
ac_cv_env_FCPICFLAGS_set= 
ac_cv_env_FCPICFLAGS_value= 
ac_cv_env_FC_set= 
ac_cv_env_FC_value= 
ac_cv_env_FFLAGS_set= 
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ac_cv_env_FPICFLAGS_set= 
ac_cv_env_FPICFLAGS_value= 
ac_cv_env_JAVA_HOME_set= 
ac_cv_env_JAVA_HOME_value= 
ac_cv_env_LAPACK_LIBS_set= 
ac_cv_env_LAPACK_LIBS_value= 
ac_cv_env_LDFLAGS_set=set 
ac_cv_env_LDFLAGS_value='-L/home/yccai/Programs/Libs/zlib/lib -L/home/yccai/Programs/Libs/bzip2/lib -L/home/yccai/Programs/Libs/xz-5.2.2/lib -L/home/yccai/Programs/Libs/pcre-8.39/lib -L/home/yccai/Programs/Libs/curl-7.50.3/lib' 
ac_cv_env_LIBS_set=set 
ac_cv_env_LIBS_value= 
ac_cv_env_LIBnn_set= 
ac_cv_env_LIBnn_value= 
ac_cv_env_LT_SYS_LIBRARY_PATH_set= 
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ac_cv_env_MAIN_CFLAGS_set= 
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ac_cv_env_MAKE_set= 
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ac_cv_env_PKG_CONFIG_LIBDIR_set= 
ac_cv_env_PKG_CONFIG_LIBDIR_value= 
ac_cv_env_PKG_CONFIG_PATH_set=set 
ac_cv_env_PKG_CONFIG_PATH_value=:/home/yccai/Programs/Libs/zlib/lib/pkgconfig 
ac_cv_env_R_BATCHSAVE_set= 
ac_cv_env_R_BATCHSAVE_value= 
ac_cv_env_R_BROWSER_set= 
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ac_cv_env_R_PAPERSIZE_set= 
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ac_cv_env_R_PDFVIEWER_set= 
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ac_cv_env_R_PRINTCMD_set= 
ac_cv_env_R_PRINTCMD_value= 
ac_cv_env_R_SHELL_set= 
ac_cv_env_R_SHELL_value= 
ac_cv_env_SAFE_FFLAGS_set= 
ac_cv_env_SAFE_FFLAGS_value= 
ac_cv_env_SHLIB_CFLAGS_set= 
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ac_cv_env_SHLIB_CXX1XLDFLAGS_set= 
ac_cv_env_SHLIB_CXX1XLDFLAGS_value= 
ac_cv_env_SHLIB_CXX1XLD_set= 
ac_cv_env_SHLIB_CXX1XLD_value= 
ac_cv_env_SHLIB_CXXLDFLAGS_set= 
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ac_cv_env_SHLIB_CXXLD_set= 
ac_cv_env_SHLIB_CXXLD_value= 
ac_cv_env_SHLIB_FCLDFLAGS_set= 
ac_cv_env_SHLIB_FCLDFLAGS_value= 
ac_cv_env_SHLIB_FCLD_set= 
ac_cv_env_SHLIB_FCLD_value= 
ac_cv_env_SHLIB_FFLAGS_set= 
ac_cv_env_SHLIB_FFLAGS_value= 
ac_cv_env_SHLIB_LDFLAGS_set= 
ac_cv_env_SHLIB_LDFLAGS_value= 
ac_cv_env_SHLIB_LD_set= 
ac_cv_env_SHLIB_LD_value= 
ac_cv_env_TAR_set= 
ac_cv_env_TAR_value= 
ac_cv_env_TCLTK_CPPFLAGS_set= 
ac_cv_env_TCLTK_CPPFLAGS_value= 
ac_cv_env_TCLTK_LIBS_set= 
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ac_cv_env_XMKMF_set= 
ac_cv_env_XMKMF_value= 
ac_cv_env_YACC_set= 
ac_cv_env_YACC_value= 
ac_cv_env_YFLAGS_set= 
ac_cv_env_YFLAGS_value= 
ac_cv_env_build_alias_set= 
ac_cv_env_build_alias_value= 
ac_cv_env_host_alias_set= 
ac_cv_env_host_alias_value= 
ac_cv_env_r_arch_set= 
ac_cv_env_r_arch_value= 
ac_cv_env_target_alias_set= 
ac_cv_env_target_alias_value= 
ac_cv_host=x86_64-pc-linux-gnu 
ac_cv_path_GETWD=/bin/pwd 
ac_cv_path_KPSEWHICH=/usr/bin/kpsewhich 
ac_cv_path_MAKEINDEX=/usr/bin/makeindex 
ac_cv_path_NOTANGLE=false 
ac_cv_path_PAGER=/usr/bin/less 
ac_cv_path_PDFLATEX=/usr/bin/pdflatex 
ac_cv_path_PDFTEX=/usr/bin/pdftex 
ac_cv_path_PKGCONF=/usr/bin/pkg-config 
ac_cv_path_REALPATH=false 
ac_cv_path_R_BROWSER=/usr/bin/firefox 
ac_cv_path_R_BZIPCMD=/usr/bin/bzip2 
ac_cv_path_R_GZIPCMD=/bin/gzip 
ac_cv_path_R_PDFVIEWER=/usr/bin/evince 
ac_cv_path_R_UNZIPCMD=/usr/bin/unzip 
ac_cv_path_R_ZIPCMD=/usr/bin/zip 
ac_cv_path_SED=/bin/sed 
ac_cv_path_TAR=/bin/gtar 
ac_cv_path_TEX=/usr/bin/tex 
ac_cv_path_WHICH=/usr/bin/which 
ac_cv_path_install='/usr/bin/install -c' 
ac_cv_prog_AR=ar 
ac_cv_prog_YACC='bison -y' 
ac_cv_prog_ac_ct_CC=gcc 

## ----------------- ## 
## Output variables. ## 
## ----------------- ## 

ACLOCAL='aclocal' 
ALLOCA='' 
AR='ar' 
ARFLAGS='rc' 
AUTOCONF='autoconf' 
AUTOHEADER='autoheader' 
AUTOMAKE='automake' 
AWK='' 
BITMAP_CPPFLAGS='' 
BITMAP_LIBS='' 
BLAS_LIBS0='' 
BLAS_LIBS='' 
BLAS_SHLIB_FALSE='' 
BLAS_SHLIB_TRUE='' 
BUILDDIR_IS_SRCDIR='yes' 
BUILD_AQUA_FALSE='' 
BUILD_AQUA_TRUE='' 
BUILD_CC='' 
BUILD_DEVCAIRO_FALSE='' 
BUILD_DEVCAIRO_TRUE='' 
BUILD_HTML_FALSE='' 
BUILD_HTML_TRUE='#' 
BUILD_INCLUDED_LIBINTL='' 
BUILD_LIBINTL_FALSE='' 
BUILD_LIBINTL_TRUE='' 
BUILD_LTO_FALSE='' 
BUILD_LTO_TRUE='#' 
BUILD_R='' 
BUILD_TRE_FALSE='' 
BUILD_TRE_TRUE='' 
BUILD_TZONE_FALSE='' 
BUILD_TZONE_TRUE='' 
BUILD_X11_FALSE='' 
BUILD_X11_TRUE='' 
BUILD_XDR_FALSE='' 
BUILD_XDR_TRUE='' 
BYTE_COMPILE_PACKAGES_FALSE='#' 
BYTE_COMPILE_PACKAGES_TRUE='' 
CAIROX11_CPPFLAGS='' 
CAIROX11_LIBS='' 
CAIRO_CPPFLAGS='' 
CAIRO_LIBS='' 
CATOBJEXT='' 
CC='gcc' 
CFLAGS='' 
CFLAG_VISIBILITY='' 
COMPILE_FORTRAN_DOUBLE_COMPLEX_FALSE='' 
COMPILE_FORTRAN_DOUBLE_COMPLEX_TRUE='' 
CPICFLAGS='' 
CPP='' 
CPPFLAGS='-l/home/yccai/Programs/Libs/zlib/include -l/home/yccai/Programs/Libs/bzip2/include -l/home/yccai/Programs/Libs/xz-5.2.2/include -l/home/yccai/Programs/Libs/pcre-8.39/include -l/home/yccai/Programs/Libs/curl-7.50.3/include' 
CROSS_COMPILING_FALSE='' 
CROSS_COMPILING_TRUE='' 
CURL_CONFIG='' 
CURL_CPPFLAGS='' 
CURL_LIBS='' 
CXX1X='' 
CXX1XFLAGS='' 
CXX1XPICFLAGS='' 
CXX1XSTD='' 
CXX='' 
CXXCPP0='' 
CXXCPP='' 
CXXFLAGS='' 
CXXPICFLAGS='' 
C_VISIBILITY='' 
DATADIRNAME='' 
DEFS='' 
DLLTOOL='' 
DSYMUTIL='' 
DUMPBIN='' 
DYLIB_EXT='' 
DYLIB_LD='' 
DYLIB_LDFLAGS='' 
DYLIB_UNDEFINED_ALLOWED_FALSE='' 
DYLIB_UNDEFINED_ALLOWED_TRUE='' 
ECHO_C='' 
ECHO_N='-n' 
ECHO_T='' 
EGREP='' 
EXEEXT='' 
F77='' 
F77_VISIBILITY='' 
FC='' 
FCFLAGS='' 
FCFLAGS_f90='' 
FCFLAGS_f95='' 
FCLIBS='' 
FCPICFLAGS='' 
FFLAGS='' 
FGREP='' 
FLIBS='' 
FLIBS_IN_SO='' 
FOUNDATION_CPPFLAGS='' 
FOUNDATION_LIBS='' 
FPICFLAGS='' 
FW_VERSION='' 
GENCAT='' 
GETWD='/bin/pwd' 
GLIBC21='' 
GLIBC2='' 
GREP='' 
HAVE_ASPRINTF='' 
HAVE_CXX11='' 
HAVE_FORTRAN_DOUBLE_COMPLEX='' 
HAVE_POSIX_PRINTF='' 
HAVE_SNPRINTF='' 
HAVE_VISIBILITY='' 
HAVE_WPRINTF='' 
INSTALL_DATA='${INSTALL} -m 644' 
INSTALL_INFO='' 
INSTALL_PROGRAM='${INSTALL}' 
INSTALL_SCRIPT='${INSTALL}' 
INSTOBJEXT='' 
INTERNET_LIBS='' 
INTLBISON='' 
INTLLIBS='' 
INTLOBJS='' 
INTL_LIBTOOL_SUFFIX_PREFIX='' 
INTL_MACOSX_LIBS='' 
JAR='' 
JAVA='' 
JAVAC='' 
JAVAH='' 
JAVA_CPPFLAGS0='' 
JAVA_HOME='' 
JAVA_LD_LIBRARY_PATH='' 
JAVA_LIBS0='' 
KPSEWHICH='/usr/bin/kpsewhich' 
LAPACK_LDFLAGS='' 
LAPACK_LIBS='' 
LD='' 
LDFLAGS='-L/home/yccai/Programs/Libs/zlib/lib -L/home/yccai/Programs/Libs/bzip2/lib -L/home/yccai/Programs/Libs/xz-5.2.2/lib -L/home/yccai/Programs/Libs/pcre-8.39/lib -L/home/yccai/Programs/Libs/curl-7.50.3/lib' 
LIBICONV='' 
LIBINTL='' 
LIBM='' 
LIBMULTITHREAD='' 
LIBOBJS='' 
LIBPTH='' 
LIBPTH_PREFIX='' 
LIBR0='-L$(R_HOME)/lib$(R_ARCH)' 
LIBR1='-lR' 
LIBR_LDFLAGS='' 
LIBS='' 
LIBTHREAD='' 
LIBTOOL='' 
LIBTOOL_DEPS='' 
LIBnn='lib64' 
LIPO='' 
LN_S='ln -s' 
LTLIBICONV='' 
LTLIBINTL='' 
LTLIBMULTITHREAD='' 
LTLIBOBJS='' 
LTLIBPTH='' 
LTLIBTHREAD='' 
LTO='' 
LTOALL='' 
LT_SYS_LIBRARY_PATH='' 
MAINTAINER_MODE_FALSE='' 
MAINTAINER_MODE_TRUE='#' 
MAIN_CFLAGS='' 
MAIN_FFLAGS='' 
MAIN_LD='' 
MAIN_LDFLAGS='' 
MAJ_MIN_VERSION='3.3' 
MAKE='make' 
MAKEINDEX='/usr/bin/makeindex' 
MAKEINFO='' 
MANIFEST_TOOL='' 
MKDIR_P='' 
NM='' 
NMEDIT='' 
NOTANGLE='false' 
OBJC='' 
OBJCFLAGS='' 
OBJCXX='' 
OBJCXXFLAGS='' 
OBJC_LIBS='' 
OBJDUMP='' 
OBJEXT='' 
OPENMP_CFLAGS='' 
OPENMP_CXXFLAGS='' 
OPENMP_FCFLAGS='' 
OPENMP_FFLAGS='' 
OSF_SH_BUG='' 
OTOOL64='' 
OTOOL='' 
PACKAGE='R' 
PACKAGE_BUGREPORT='https://bugs.r-project.org' 
PACKAGE_NAME='R' 
PACKAGE_STRING='R 3.3.1' 
PACKAGE_TARNAME='R' 
PACKAGE_URL='https://www.r-project.org' 
PACKAGE_VERSION='3.3.1' 
PAGER='/usr/bin/less' 
PAPERCONF='' 
PATH_SEPARATOR=':' 
PDFLATEX='/usr/bin/pdflatex' 
PDFTEX='/usr/bin/pdftex' 
PKGCONF='/usr/bin/pkg-config' 
PKG_CONFIG_LIBDIR='' 
PKG_CONFIG_PATH=':/home/yccai/Programs/Libs/zlib/lib/pkgconfig' 
POSUB='' 
PRI_MACROS_BROKEN='' 
RANLIB='' 
RBLAS_LDFLAGS='' 
READLINE_LIBS='' 
REALPATH='false' 
RLAPACK_LDFLAGS='' 
RMATH_HAVE_EXPM1='' 
RMATH_HAVE_HYPOT='' 
RMATH_HAVE_LOG1P='' 
RMATH_HAVE_WORKING_LOG1P='' 
R_ARCH='' 
R_BATCHSAVE='' 
R_BROWSER='/usr/bin/firefox' 
R_BZIPCMD='/usr/bin/bzip2' 
R_CONFIG_ARGS=' '\''--prefix=/home/yccai/Programs/R'\'' '\''--enable-R-shlib'\'' '\''LDFLAGS=-L/home/yccai/Programs/Libs/zlib/lib -L/home/yccai/Programs/Libs/bzip2/lib -L/home/yccai/Programs/Libs/xz-5.2.2/lib -L/home/yccai/Programs/Libs/pcre-8.39/lib -L/home/yccai/Programs/Libs/curl-7.50.3/lib'\'' '\''CPPFLAGS=-l/home/yccai/Programs/Libs/zlib/include -l/home/yccai/Programs/Libs/bzip2/include -l/home/yccai/Programs/Libs/xz-5.2.2/include -l/home/yccai/Programs/Libs/pcre-8.39/include -l/home/yccai/Programs/Libs/curl-7.50.3/include'\'' '\''PKG_CONFIG_PATH=:/home/yccai/Programs/Libs/zlib/lib/pkgconfig'\'' '\''CFLAGS='\'' '\''LIBS='\''' 
R_DEFS='' 
R_DYLIB_EXT='' 
R_GZIPCMD='/bin/gzip' 
R_JAVA_LD_LIBRARY_PATH='' 
R_LD_LIBRARY_PATH='' 
R_OPENMP_CFLAGS='' 
R_OPENMP_FFLAGS='' 
R_OS='linux-gnu' 
R_OSTYPE='unix' 
R_PAPERSIZE='' 
R_PDFVIEWER='/usr/bin/evince' 
R_PLATFORM='x86_64-pc-linux-gnu' 
R_PRINTCMD='' 
R_PROFILING='' 
R_RD4PDF='times,hyper' 
R_SHELL='' 
R_SYSTEM_ABI='' 
R_UNZIPCMD='/usr/bin/unzip' 
R_XTRA_CFLAGS='' 
R_XTRA_CPPFLAGS2='-I$(R_INCLUDE_DIR)' 
R_XTRA_CPPFLAGS='' 
R_XTRA_CXXFLAGS='' 
R_XTRA_FFLAGS='' 
R_XTRA_LIBS='' 
R_ZIPCMD='/usr/bin/zip' 
Rshlibpath_var='' 
SAFE_FFLAGS='' 
SED='/bin/sed' 
SHELL='/bin/sh' 
SHLIB_CFLAGS='' 
SHLIB_CXX1XLD='' 
SHLIB_CXX1XLDFLAGS='' 
SHLIB_CXXFLAGS='' 
SHLIB_CXXLD='' 
SHLIB_CXXLDFLAGS='' 
SHLIB_EXT='' 
SHLIB_FCLD='' 
SHLIB_FCLDFLAGS='' 
SHLIB_FFLAGS='' 
SHLIB_LD='' 
SHLIB_LDFLAGS='' 
SHLIB_LIBADD='' 
SHLIB_OPENMP_CFLAGS='' 
SHLIB_OPENMP_CXXFLAGS='' 
SHLIB_OPENMP_FCFLAGS='' 
SHLIB_OPENMP_FFLAGS='' 
STATICR1='' 
STATICR2='' 
STRIP='' 
TAR='/bin/gtar' 
TCLTK_CPPFLAGS='' 
TCLTK_LIBS='' 
TCL_CONFIG='' 
TEX='/usr/bin/tex' 
TEXI2DVI='' 
TEXI2DVICMD='texi2dvi' 
TIRPC_CPPFLAGS='' 
TK_CONFIG='' 
USE_EXPORTFILES_FALSE='' 
USE_EXPORTFILES_TRUE='' 
USE_EXTERNAL_BLAS_FALSE='' 
USE_EXTERNAL_BLAS_TRUE='' 
USE_EXTERNAL_LAPACK_FALSE='' 
USE_EXTERNAL_LAPACK_TRUE='' 
USE_ICU='' 
USE_ICU_APPLE='' 
USE_INCLUDED_LIBINTL='' 
USE_MMAP_ZLIB_FALSE='' 
USE_MMAP_ZLIB_TRUE='' 
USE_NLS='' 
USE_NLS_FALSE='' 
USE_NLS_TRUE='' 
USE_RECOMMENDED_PACKAGES_FALSE='' 
USE_RECOMMENDED_PACKAGES_TRUE='' 
USE_VECLIB_G95FIX_FALSE='' 
USE_VECLIB_G95FIX_TRUE='' 
VERSION='3.3.1' 
WANT_JAVA_FALSE='#' 
WANT_JAVA_TRUE='' 
WANT_R_FRAMEWORK_FALSE='' 
WANT_R_FRAMEWORK_TRUE='#' 
WANT_R_SHLIB_FALSE='#' 
WANT_R_SHLIB_TRUE='' 
WANT_R_STATIC_FALSE='' 
WANT_R_STATIC_TRUE='#' 
WHICH='/usr/bin/which' 
WOE32DLL='' 
XMKMF='' 
XTRA_INTL_CPPFLAGS='' 
X_CFLAGS='' 
X_EXTRA_LIBS='' 
X_LIBS='' 
X_PRE_LIBS='' 
YACC='bison -y' 
YFLAGS='' 
ac_ct_AR='' 
ac_ct_CC='gcc' 
ac_ct_CXX='' 
ac_ct_DUMPBIN='' 
ac_ct_F77='' 
ac_ct_FC='' 
ac_ct_OBJC='' 
bindir='${exec_prefix}/bin' 
build='x86_64-pc-linux-gnu' 
build_alias='' 
build_cpu='x86_64' 
build_os='linux-gnu' 
build_vendor='pc' 
config_opts=' '\''--prefix=/home/yccai/Programs/R'\'' '\''--enable-R-shlib'\'' '\''LDFLAGS=-L/home/yccai/Programs/Libs/zlib/lib -L/home/yccai/Programs/Libs/bzip2/lib -L/home/yccai/Programs/Libs/xz-5.2.2/lib -L/home/yccai/Programs/Libs/pcre-8.39/lib -L/home/yccai/Programs/Libs/curl-7.50.3/lib'\'' '\''CPPFLAGS=-l/home/yccai/Programs/Libs/zlib/include -l/home/yccai/Programs/Libs/bzip2/include -l/home/yccai/Programs/Libs/xz-5.2.2/include -l/home/yccai/Programs/Libs/pcre-8.39/include -l/home/yccai/Programs/Libs/curl-7.50.3/include'\'' '\''PKG_CONFIG_PATH=:/home/yccai/Programs/Libs/zlib/lib/pkgconfig'\'' '\''CFLAGS='\'' '\''LIBS='\''' 
custom_JAVA_CPPFLAGS='' 
custom_JAVA_HOME='' 
custom_JAVA_LD_LIBRARY_PATH='' 
custom_JAVA_LIBS='' 
datadir='${datarootdir}' 
datarootdir='${prefix}/share' 
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' 
dvidir='${docdir}' 
exec_prefix='NONE' 
host='x86_64-pc-linux-gnu' 
host_alias='' 
host_cpu='x86_64' 
host_os='linux-gnu' 
host_vendor='pc' 
htmldir='${docdir}' 
includedir='${prefix}/include' 
infodir='${datarootdir}/info' 
libdir='${exec_prefix}/${LIBnn}' 
libexecdir='${exec_prefix}/libexec' 
localedir='${datarootdir}/locale' 
localstatedir='${prefix}/var' 
mandir='${datarootdir}/man' 
mkdir_p='' 
oldincludedir='/usr/include' 
pdfdir='${docdir}' 
prefix='/home/yccai/Programs/R' 
program_transform_name='s,x,x,' 
psdir='${docdir}' 
r_arch='' 
rdocdir='${rhome}/doc' 
rincludedir='${rhome}/include' 
rsharedir='${rhome}/share' 
sbindir='${exec_prefix}/sbin' 
sharedstatedir='${prefix}/com' 
shlibpath_var='' 
striplib='' 
stripstaticlib='' 
sysconfdir='${prefix}/etc' 
target_alias='' 
use_tcltk='' 

## ------------------- ## 
## File substitutions. ## 
## ------------------- ## 

r_cc_lo_rules_frag='' 
r_cc_rules_frag='' 
r_cxx_rules_frag='' 
r_objc_rules_frag='' 

## ----------- ## 
## confdefs.h. ## 
## ----------- ## 

/* confdefs.h */ 
#define PACKAGE_NAME "R" 
#define PACKAGE_TARNAME "R" 
#define PACKAGE_VERSION "3.3.1" 
#define PACKAGE_STRING "R 3.3.1" 
#define PACKAGE_BUGREPORT "https://bugs.r-project.org" 
#define PACKAGE_URL "https://www.r-project.org" 
#define PACKAGE "R" 
#define VERSION "3.3.1" 
#define R_PLATFORM "x86_64-pc-linux-gnu" 
#define R_CPU "x86_64" 
#define R_VENDOR "pc" 
#define R_OS "linux-gnu" 
#define Unix 1 
#define R_ARCH "" 

configure: exit 77 

Answer 1

I有し正常ソースファイルから$CPATH可変

export CPATH=/panfs/home/yangpc/soft/lib/zlib-1.2.8/include/:$CPATH 
./configure --prefix=/panfs/home/yangpc/soft/R/R_soft/ --enable-R-shlib --with-libpth-prefix=/panfs/home/yangpc/soft/