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私はムースを学習されていると私のテストに苦しんでいますが、私は私.Tスクリプトを用意しましたエラーメッセージblessされていないハッシュリファレンスエラー
Type of argument to keys on reference must be unblessed hashref or arrayref at ./GO2.t line 40, <DATA> chunk 1.
を得続ける、私はこのエラーを修正するかどうかはわかりませんまったく無二のハッシュリファレンスが何であるかについては何の答えも見つけられていません。私はDATAのすべてを含んでいませんでしたが、ほんの数回繰り返しました。 私は
#!/usr/bin/perl
use warnings;
use strict;
use GO2;
use MooseX::FollowPBP;
use Test::More tests => 44;
#Initialize $_ to prevent warnings in redefinition of $/ as RegEx
$_ = '';
local $/ = /\[Term\]|\[Typedef\]/;
while (<DATA>) {
# Remove end-of-line characters
chomp;
# parse the record using a regular expression
my $longGoDesc = $_;
#Create a new GO object
my $go = GO2->new('longGoDesc' => $longGoDesc);
# ok is a test function that prints ok if the test is true, and
ok(defined $go->get_id());
ok(defined $go->get_def());
ok(defined $go->get_name());
ok(defined $go->get_namespace());
# Initialize is_a counter
my $isaCount = 0;
#Loop through the is_a array reference
foreach my $isaRef (keys $go->{is_as}) {
#Make sure the is_a is defined
ok($go->get_is_as()->[$isaRef]);
#Increment is_a counter
$isaCount++;
}
#Make sure at least one is_a
ok($isaCount > 0);
# Initialize alt_id counter
my $altIdCount = 0;
# Check for alt_id
# if (defined $go->{alt_ids}) {
#Loop through is_a
foreach my $altIdRef (keys $go->{alt_ids}) {
ok($go->get_alt_ids()->[$altIdRef]);
# Increment alt_id counter
$altIdCount++;
}
#Make sure at least one alt_id
ok($altIdCount > 0);
}
# Indicate that tests are done
done_testing();
# Everything below __END__ is treated as input for the DATA filehandle.
__END__
[Term]
id: GO:2001315
name: UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthetic process
namespace: biological_process
alt_id: GO:0019901
def: "The chemical reactions and pathways resulting in the formation of a UDP-4-deoxy-4-formamido-beta-L-arabinopyranose." [CHEBI:47027, GOC:yaf, UniPathway:UPA00032]
synonym: "UDP-4-deoxy-4-formamido-beta-L-arabinopyranose anabolism" EXACT [GOC:obol]
synonym: "UDP-4-deoxy-4-formamido-beta-L-arabinopyranose biosynthesis" EXACT [GOC:obol]
synonym: "UDP-4-deoxy-4-formamido-beta-L-arabinopyranose formation" EXACT [GOC:obol]
synonym: "UDP-4-deoxy-4-formamido-beta-L-arabinopyranose synthesis" EXACT [GOC:obol]
is_a: GO:0009226 ! nucleotide-sugar biosynthetic process
is_a: GO:0046349 ! amino sugar biosynthetic process
is_a: GO:2001313 ! UDP-4-deoxy-4-formamido-beta-L-arabinopyranose metabolic process
[Term]
id: GO:2001316
name: kojic acid metabolic process
namespace: biological_process
alt_id: GO:0019902
def: "The chemical reactions and pathways involving kojic acid." [CHEBI:43572, GOC:di]
synonym: "5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one metabolic process" EXACT [CHEBI:43572, GOC:obol]
synonym: "5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one metabolism" EXACT [CHEBI:43572, GOC:obol]
synonym: "C6H6O4 metabolic process" RELATED [CHEBI:43572, GOC:obol]
synonym: "C6H6O4 metabolism" RELATED [CHEBI:43572, GOC:obol]
synonym: "kojic acid metabolism" EXACT [GOC:obol]
is_a: GO:0034308 ! primary alcohol metabolic process
is_a: GO:0042180 ! cellular ketone metabolic process
is_a: GO:0046483 ! heterocycle metabolic process
is_a: GO:1901360 ! organic cyclic compound metabolic process
[Term]
id: GO:2001317
name: kojic acid biosynthetic process
namespace: biological_process
alt_id: GO:0019903
def: "The chemical reactions and pathways resulting in the formation of kojic acid." [CHEBI:43572, GOC:di]
synonym: "5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one anabolism" EXACT [CHEBI:43572, GOC:obol]
synonym: "5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthesis" EXACT [CHEBI:43572, GOC:obol]
synonym: "5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one biosynthetic process" EXACT [CHEBI:43572, GOC:obol]
synonym: "5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one formation" EXACT [CHEBI:43572, GOC:obol]
synonym: "5-hydroxy-2-(hydroxymethyl)-4H-pyran-4-one synthesis" EXACT [CHEBI:43572, GOC:obol]
synonym: "C6H6O4 anabolism" RELATED [CHEBI:43572, GOC:obol]
synonym: "C6H6O4 biosynthesis" RELATED [CHEBI:43572, GOC:obol]
synonym: "C6H6O4 biosynthetic process" RELATED [CHEBI:43572, GOC:obol]
synonym: "C6H6O4 formation" RELATED [CHEBI:43572, GOC:obol]
synonym: "C6H6O4 synthesis" RELATED [CHEBI:43572, GOC:obol]
synonym: "kojic acid anabolism" EXACT [GOC:obol]
synonym: "kojic acid biosynthesis" EXACT [GOC:obol]
synonym: "kojic acid formation" EXACT [GOC:obol]
synonym: "kojic acid synthesis" EXACT [GOC:obol]
is_a: GO:0018130 ! heterocycle biosynthetic process
is_a: GO:0034309 ! primary alcohol biosynthetic process
is_a: GO:0042181 ! ketone biosynthetic process
is_a: GO:1901362 ! organic cyclic compound biosynthetic process
is_a: GO:2001316 ! kojic acid metabolic process
synonym: "Roundabout signalling pathway involved in muscle cell chemotaxis toward tendon cell" EXACT [GOC:obol]
synonym: "Roundabout signalling pathway involved in muscle cell chemotaxis towards tendon cell" EXACT [GOC:obol]
is_a: GO:0035385 ! Roundabout signaling pathway
relationship: part_of GO:0036061 ! muscle cell chemotaxis toward tendon cell
[Term]
id: GO:2001284
name: regulation of BMP secretion
namespace: biological_process
alt_id: GO:0019904
def: "Any process that modulates the frequency, rate or extent of BMP secretion." [GOC:sart]
synonym: "regulation of BMP protein secretion" EXACT [GOC:obol]
synonym: "regulation of bone morphogenetic protein secretion" EXACT [GOC:obol]
is_a: GO:0010646 ! regulation of cell communication
is_a: GO:0023051 ! regulation of signaling
{$行く - > {is_as}} 'キー%を試してみてください - それがある場合、'、それはハッシュリファレンス、または単に '@ {> {is_as} $行く}であれば'配列参照。 – xxfelixxx
'local $/=/\ [Term \] | \ [Typedef \] /;'は$ /を正規表現に設定しません。正規表現と '$ _'をマッチさせ、' $/'(真に' '1 '' '' '' '')にブール結果を代入します。 – melpomene
http://perldoc.perl.org/perlreftut.html – xxfelixxx