CentOS 7にmpi4pyをインストールできない

Question

私はCentOS 7を持っており、mpiccをインストールしました（これはCでopenmpi用にコンパイルされています）。私もpython 2.7.5を持っていて、ちょうどpipをインストールしました。私は、このコマンドを実行すると、次のエラーを取得しています：

sudo pip install mpi4py 

Collecting mpi4py Using cached mpi4py-2.0.0.tar.gz Installing 
> collected packages: mpi4py Running setup.py install for mpi4py ... 
> error 
>  Complete output from command /usr/bin/python2 -u -c "import setuptools, 
> tokenize;__file__='/tmp/pip-build-x5jD4O/mpi4py/setup.py';exec(compile(getattr(tokenize, 
> 'open', open)(__file__).read().replace('\r\n', '\n'), __file__, 
> 'exec'))" install --record /tmp/pip-mpMoZO-record/install-record.txt 
> --single-version-externally-managed --compile: 
>  running install 
>  running build 
>  running build_src 
>  running build_py 
>  creating build 
>  creating build/lib.linux-x86_64-2.7 
>  creating build/lib.linux-x86_64-2.7/mpi4py 
>  copying src/__main__.py -> build/lib.linux-x86_64-2.7/mpi4py 
>  copying src/__init__.py -> build/lib.linux-x86_64-2.7/mpi4py 
>  creating build/lib.linux-x86_64-2.7/mpi4py/include 
>  creating build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/include/mpi4py/mpi4py.MPI.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/include/mpi4py/mpi4py.MPI_api.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/include/mpi4py/mpi4py.h -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/include/mpi4py/__init__.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/include/mpi4py/libmpi.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/include/mpi4py/MPI.pxd -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/include/mpi4py/__init__.pyx -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/include/mpi4py/mpi.pxi -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/include/mpi4py/mpi4py.i -> build/lib.linux-x86_64-2.7/mpi4py/include/mpi4py 
>  copying src/MPI.pxd -> build/lib.linux-x86_64-2.7/mpi4py 
>  copying src/libmpi.pxd -> build/lib.linux-x86_64-2.7/mpi4py 
>  running build_clib 
>  MPI configuration: [mpi] from 'mpi.cfg' 
>  checking for library 'lmpe' ... 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o 
>  gcc -pthread _configtest.o -llmpe -o _configtest 
>  /bin/ld: cannot find -llmpe 
>  collect2: error: ld returned 1 exit status 
>  failure. 
>  removing: _configtest.c _configtest.o 
>  building 'mpe' dylib library 
>  creating build/temp.linux-x86_64-2.7 
>  creating build/temp.linux-x86_64-2.7/src 
>  creating build/temp.linux-x86_64-2.7/src/lib-pmpi 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/mpe.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/mpe.o 
>  creating build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi 
>  gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/mpe.o -o 
> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libmpe.so 
>  checking for library 'vt-mpi' ... 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o 
>  gcc -pthread _configtest.o -lvt-mpi -o _configtest 
>  /bin/ld: cannot find -lvt-mpi 
>  collect2: error: ld returned 1 exit status 
>  failure. 
>  removing: _configtest.c _configtest.o 
>  checking for library 'vt.mpi' ... 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o 
>  gcc -pthread _configtest.o -lvt.mpi -o _configtest 
>  /bin/ld: cannot find -lvt.mpi 
>  collect2: error: ld returned 1 exit status 
>  failure. 
>  removing: _configtest.c _configtest.o 
>  building 'vt' dylib library 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/vt.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt.o 
>  gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/vt.o -o 
> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt.so 
>  checking for library 'vt-mpi' ... 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o 
>  gcc -pthread _configtest.o -lvt-mpi -o _configtest 
>  /bin/ld: cannot find -lvt-mpi 
>  collect2: error: ld returned 1 exit status 
>  failure. 
>  removing: _configtest.c _configtest.o 
>  checking for library 'vt.mpi' ... 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o 
>  gcc -pthread _configtest.o -lvt.mpi -o _configtest 
>  /bin/ld: cannot find -lvt.mpi 
>  collect2: error: ld returned 1 exit status 
>  failure. 
>  removing: _configtest.c _configtest.o 
>  building 'vt-mpi' dylib library 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/vt-mpi.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-mpi.o 
>  gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-mpi.o -o 
> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-mpi.so 
>  checking for library 'vt-hyb' ... 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o 
>  gcc -pthread _configtest.o -lvt-hyb -o _configtest 
>  /bin/ld: cannot find -lvt-hyb 
>  collect2: error: ld returned 1 exit status 
>  failure. 
>  removing: _configtest.c _configtest.o 
>  checking for library 'vt.ompi' ... 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c _configtest.c -o _configtest.o 
>  gcc -pthread _configtest.o -lvt.ompi -o _configtest 
>  /bin/ld: cannot find -lvt.ompi 
>  collect2: error: ld returned 1 exit status 
>  failure. 
>  removing: _configtest.c _configtest.o 
>  building 'vt-hyb' dylib library 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -c src/lib-pmpi/vt-hyb.c -o build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-hyb.o 
>  gcc -pthread -shared -Wl,-z,relro build/temp.linux-x86_64-2.7/src/lib-pmpi/vt-hyb.o -o 
> build/lib.linux-x86_64-2.7/mpi4py/lib-pmpi/libvt-hyb.so 
>  running build_ext 
>  MPI configuration: [mpi] from 'mpi.cfg' 
>  checking for MPI compile and link ... 
>  gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector-strong --param=ssp-buffer-size=4 -grecord-gcc-switches -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -I/usr/include/python2.7 -c _configtest.c -o _configtest.o 
>  _configtest.c:2:17: fatal error: mpi.h: No such file or directory 
>  #include <mpi.h> 
>     ^
>  compilation terminated. 
>  failure. 
>  removing: _configtest.c _configtest.o 
>  error: Cannot compile MPI programs. Check your configuration!!! 

私は私がこれまでに見つかったすべてのソリューションを試してみましたが、どれも動作するように見えない、この問題について誰どんな考えをしてください持っていますか？必要がありますyumを通じてあなたがopenmpi-devel（または同等）をインストールする必要があり

_configtest.c:2:17: fatal error: mpi.h: No such file or directory 
    #include <mpi.h> 

とあなた：ここで重要である線である、あなたがCentOSに上OpenMPIののdevelopmentファイルをインストールするために逃したらしいあなた

Answer 1

ありがとうございましたmpi4pyモジュールを再インストールすることをお勧めします。